OmicsNet

- a 3D network visual analytics platform for multi-omics integration

Overview

OmicsNet accepts a single or multiple list(s) of genes, transcription factors (TFs), miRNAs or metabolites. Different types of biological networks can be easily created using mulitple built-in molecular interaction databases on PPI, TF-gene, miRNA-gene and metabolite-protein interactions. Users can explore the results in 3D force-directed layout, 2D perspective layout, as well as spherical layout, with built-in supports for functional, topological and integrative analysis.

Some 3D network visualization generated by OmicsNet (more available from our Gallery):
Flow Chart

Left: force-directed layout (with edge bundling and halo effect); Middle: multi-layered layout (for multi-omics integration); Right: spherical layout (inspired by Google Earth)

Animation: overview of a PPI network using hierarchical layout;